{"id":229,"date":"2025-01-22T22:39:37","date_gmt":"2025-01-22T16:54:37","guid":{"rendered":"https:\/\/pokharelsugam.com.np\/bioinformatics\/?p=229"},"modified":"2025-01-22T22:43:46","modified_gmt":"2025-01-22T16:58:46","slug":"linux-command","status":"publish","type":"post","link":"https:\/\/pokharelsugam.com.np\/bioinformatics\/linux-command\/","title":{"rendered":"Basic Linux(Debian) Command"},"content":{"rendered":"\n

Full Forms<\/strong><\/h4>\n\n\n\n

sudo:<\/strong> super user do<\/p>\n\n\n\n

apt:<\/strong> Advanced Packaging Tool<\/p>\n\n\n\n

pip:<\/strong> Package Installer for Python<\/p>\n\n\n\n

dpkg:<\/strong> Debian PacKaGe manager<\/p>\n\n\n\n

Press Ctrl + O for Save<\/p>\n\n\n\n

clear:<\/strong> Clean terminal<\/p>\n\n\n\n

sudo shutdown now : Shut Down Lubuntu<\/p>\n\n\n\n

ssh linux default port: port: 22<\/p>\n\n\n\n

Type<\/strong><\/td>Linux Command<\/strong><\/td>Function<\/strong><\/td><\/tr>
Update<\/strong><\/td>sudo apt update<\/em><\/td> <\/td><\/tr>
 <\/td>sudo apt upgrade<\/em><\/td> <\/td><\/tr>
 <\/td>sudo apt update && sudo apt upgrade<\/em><\/td> <\/td><\/tr>
Software Installation<\/strong><\/td>sudo apt install app_name<\/em><\/td>Direct install From Server<\/td><\/tr>
 <\/td>cd \/path <\/em><\/td>Go to directory where software is present<\/td><\/tr>
 <\/td>sudo dpkg -i file_name.deb <\/em><\/td>Install Downloaded app<\/td><\/tr>
 <\/td>which app_name<\/em><\/td>Verify Installation<\/td><\/tr>
 <\/td>dpkg –list<\/em><\/td>All installed APT package<\/td><\/tr>
 <\/td>snap list<\/em><\/td>All Snap Application<\/td><\/tr>
 <\/td>flatpak list<\/em><\/td>All Flatpak Application<\/td><\/tr>
 <\/td>sudo apt install postgresql<\/em><\/td>PostgreSQL<\/td><\/tr>
 <\/td>sudo apt install postgresql-contrib<\/em><\/td>PostgreSQL Contribution<\/td><\/tr>
 <\/td>sudo apt install python3-venv<\/em><\/td>Virtual Environment<\/td><\/tr>
Software Uninstall<\/strong><\/td>sudo apt remove app_name<\/em><\/td>Uninstall App only<\/td><\/tr>
 <\/td>sudo apt purge app_name<\/em><\/td>Uninstall app and Config Files<\/td><\/tr>
Open Apps<\/strong><\/td>app_name<\/em><\/td> <\/td><\/tr>
 <\/td>firefox<\/em><\/td>Open Firefox<\/td><\/tr>
 <\/td>libreoffice –writer<\/em><\/td>Open Libre Writer<\/td><\/tr>
 <\/td>python3<\/em><\/td>Open Python Terminal<\/td><\/tr>
 <\/td>code<\/em><\/td>Open Visual Studio Code<\/td><\/tr>
Open File by Specific App<\/strong><\/td>app_name filename.extension<\/em><\/td> <\/td><\/tr>
 <\/td>nano filename.txt<\/em><\/td>Open filename.txt in Nano Editor<\/td><\/tr>
 <\/td>code test.py<\/em><\/td>Open test.py file in VS Code<\/td><\/tr>
Disk\/Partition<\/strong><\/td>lsblk<\/em><\/td>Display all block device (Disk\/Partition)<\/td><\/tr>
 <\/td>sudo fdisk -l<\/em><\/td>Detailed info of disk<\/td><\/tr>
 <\/td>sudo apt install gparted<\/em><\/td>Install Gparted (GUI Partition Manager)<\/td><\/tr>
 <\/td>gparted<\/em><\/td>Open Gparted<\/td><\/tr>
Open URL<\/strong><\/td>xdg-open https:\/\/domain<\/em><\/td>Universal Url Open Method<\/td><\/tr>
 <\/td>firefox https:\/\/domain<\/em><\/td>Open URL in firefox<\/td><\/tr>
Directory\/Files<\/strong><\/td>cd \/path <\/em><\/td>Go to directory<\/td><\/tr>
 <\/td>cd .. <\/em><\/td>Go one step back from directory<\/td><\/tr>
 <\/td>mkdir directory_name<\/em><\/td>Create directory<\/td><\/tr>
 <\/td>mkdir -p parent_directory\/child_directory<\/em><\/td>Create two director that is create parent directory first and then child directory inside it<\/td><\/tr>
 <\/td>ls<\/em><\/td>List the content of parent directory<\/td><\/tr>
 <\/td>ls -l \/path\/to\/directory<\/em><\/td>Check full path of directory<\/td><\/tr>
 <\/td>mkdir -m 755 directory_name<\/em><\/td>Give Specific Permission, eg; mkdir -m 700 secure_folder<\/td><\/tr>
 <\/td>touch file_name.extension<\/em><\/td>Create File<\/td><\/tr>
 <\/td>nano filename.txt<\/em><\/td>Open text file in nano text editor<\/td><\/tr>
 <\/td>rm filename.extension<\/em><\/td>To delete file of current directory<\/td><\/tr>
 <\/td>mv \/source_path\/filename.extension \/destination_path\/<\/em><\/td>Move file from source directory to destination directory<\/td><\/tr>
 <\/td>mv \/source_path\/directory \/destination_path\/directory<\/em><\/td>Move directory from source directory to destination directory<\/td><\/tr>
 <\/td>cp \/source_path\/filename.extension \/destination_path\/<\/em><\/td>Copy file from source directory to destination directory<\/td><\/tr>
 <\/td>rmdir \/directory_path<\/em><\/td>Delete Empty Directory<\/td><\/tr>
 <\/td>rmdir -r \/directory_path<\/em><\/td>Delete a directory with content<\/td><\/tr>
Remote Login (SSH) Setup<\/strong><\/td>sudo apt install openssh-server<\/em><\/td>Install SSH Server<\/td><\/tr>
 <\/td>sudo systemctl status ssh<\/em><\/td>Check if SSH server is running<\/td><\/tr>
 <\/td>sudo systemctl start ssh<\/em><\/td>If SSH is not active please make activate<\/td><\/tr>
 <\/td>sudo systemctl enable ssh<\/em><\/td>Enable ssh to start automatically while booting<\/td><\/tr>
 <\/td>ip addr<\/em><\/td>Check IP address<\/td><\/tr>
 <\/td>sudo ufw allow ssh<\/em><\/td>Allow ssh in firewall<\/td><\/tr>
 <\/td>sudo nano \/etc\/ssh\/sshd_config<\/em><\/td>Check ssh configuration for port no<\/td><\/tr>
SSH Login<\/strong><\/td>ssh host_user@ip_address<\/em><\/td> <\/td><\/tr>
Python<\/strong><\/td>python3<\/em><\/td>Open Python Terminal<\/td><\/tr>
 <\/td>exit()<\/em><\/td>Exit from python terminal<\/td><\/tr>
 <\/td>python3 \/path_to_script\/script_name.py<\/em><\/td>Run Python Script<\/td><\/tr>
 <\/td>sudo apt install python3-pip<\/em><\/td>Install pip<\/td><\/tr>
 <\/td>pip3 \u2013version<\/em><\/td>Pip Version<\/td><\/tr>
 <\/td>sudo apt install python3-biopython<\/em><\/td>Install Biopython<\/td><\/tr><\/tbody><\/table><\/figure>\n","protected":false},"excerpt":{"rendered":"

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