{"id":1059,"date":"2025-02-23T18:28:14","date_gmt":"2025-02-23T12:43:14","guid":{"rendered":"https:\/\/pokharelsugam.com.np\/bioinformatics\/?p=1059"},"modified":"2025-11-25T22:37:37","modified_gmt":"2025-11-25T16:52:37","slug":"bioinformatics-tools","status":"publish","type":"post","link":"https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/","title":{"rendered":"Bioinformatics Tools"},"content":{"rendered":"\n<h2 class=\"wp-block-heading\">Sequence Analysis  Tools<\/h2>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Pairwise Sequence Alignment Tools<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Basic  Local Alignment Search Tool (BLAST) :       <a href=\"https:\/\/blast.ncbi.nlm.nih.gov\/Blast.cgi\">https:\/\/blast.ncbi.nlm.nih.gov\/Blast.cgi<\/a> (Alignment and Similarity Searching)<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Multiple Sequence Alignment Tools<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Clustal Omega:   <a href=\"https:\/\/www.ebi.ac.uk\/jdispatcher\/msa\/clustalo\">https:\/\/www.ebi.ac.uk\/jdispatcher\/msa\/clustalo<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Clustal W:  <a href=\"https:\/\/www.genome.jp\/tools-bin\/clustalw\">https:\/\/www.genome.jp\/tools-bin\/clustalw<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">MAFFT :    <a href=\"https:\/\/mafft.cbrc.jp\/alignment\/software\/\">https:\/\/mafft.cbrc.jp\/alignment\/software\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Sequence Analysis Tools<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Ensemble: <a href=\"https:\/\/asia.ensembl.org\/index.html\">https:\/\/asia.ensembl.org\/index.html<\/a>  (Exon, Intron, Genomic Content)<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">UniProt:  <a href=\"https:\/\/www.uniprot.org\/\">https:\/\/www.uniprot.org\/<\/a>  (Functional domains, variants, PTMs)<\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Motif Based Sequence Analysis Tool<\/strong><\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">MEME  :   <a href=\"https:\/\/meme-suite.org\/meme\/\">https:\/\/meme-suite.org\/meme\/<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Mutation and Cancer Analysis<\/strong><\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">COSMIC :  <a href=\"https:\/\/cancer.sanger.ac.uk\/cosmic\/\">https:\/\/cancer.sanger.ac.uk\/cosmic\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">cBioPortal :  <a href=\"https:\/\/www.cbioportal.org\/\">https:\/\/www.cbioportal.org\/<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Protein Protein Interactions<\/strong><\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">STRING :  <a href=\"https:\/\/string-db.org\/\">https:\/\/string-db.org\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">BioGRID :  <a href=\"https:\/\/thebiogrid.org\/\">https:\/\/thebiogrid.org\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">IntAct :  <a href=\"https:\/\/www.ebi.ac.uk\/intact\/home\">https:\/\/www.ebi.ac.uk\/intact\/home<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Protein <\/strong>Parameter (Physiochemical) Calculator<\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">ProtParam :  <a href=\"https:\/\/web.expasy.org\/protparam\/\">https:\/\/web.expasy.org\/protparam\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">GPCR Protein :  <a href=\"https:\/\/gpcr.utep.edu\/\">https:\/\/gpcr.utep.edu\/<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Gene Expression Profiling<\/strong><\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">GTEx : <a href=\"https:\/\/www.gtexportal.org\/home\/\">https:\/\/www.gtexportal.org\/home\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">GEO Profiles :  <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/geoprofiles\/\">https:\/\/www.ncbi.nlm.nih.gov\/geoprofiles\/<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Target Prediction<\/strong><\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">miRTarBase :  <a href=\"https:\/\/mirtarbase.cuhk.edu.cn\/~miRTarBase\/miRTarBase_2025\/php\/index.php\">https:\/\/mirtarbase.cuhk.edu.cn\/~miRTarBase\/miRTarBase_2025\/php\/index.php<\/a>  miRNA Targetting<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">TargetScan :  <a href=\"https:\/\/www.targetscan.org\/vert_80\/\">https:\/\/www.targetscan.org\/vert_80\/<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Structural Biology<\/strong><\/h2>\n\n\n\n<p class=\"wp-block-paragraph\"> SwissModel :  <a href=\"https:\/\/swissmodel.expasy.org\/interactive\">https:\/\/swissmodel.expasy.org\/interactive<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">I-TASSER : <a href=\"https:\/\/zhanggroup.org\/I-TASSER\/\">https:\/\/zhanggroup.org\/I-TASSER\/<\/a>  Protein structure and function prediction<\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Disease Pathway<\/strong><\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">Kegg Pathway : <a href=\"https:\/\/www.genome.jp\/kegg\/pathway.html\">https:\/\/www.genome.jp\/kegg\/pathway.html<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Biocarta :  <\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Open Reading Frame Finder<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">ORF Finder:   <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/orffinder\/\">https:\/\/www.ncbi.nlm.nih.gov\/orffinder\/<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Transcription\/Translation<\/strong><\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">Expasy Translate:    <a href=\"https:\/\/web.expasy.org\/translate\/\">https:\/\/web.expasy.org\/translate\/<\/a> (DNA\/RNA to Protein)<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Structural Bioinformatics &amp; Molecular Modeling<\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">PyMOL:   <a href=\"https:\/\/pymol.org\/\">https:\/\/pymol.org\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Avogadro: <a href=\"https:\/\/avogadro.cc\/\">https:\/\/avogadro.cc\/<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Molecular Docking<\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">AutoDock:   <a href=\"https:\/\/autodock.scripps.edu\/\">https:\/\/autodock.scripps.edu\/<\/a> (MGLTools required to work on GUI)<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">MGLTools:   <a href=\"https:\/\/ccsb.scripps.edu\/mgltools\/downloads\/\">https:\/\/ccsb.scripps.edu\/mgltools\/downloads\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">SwissDock : <a href=\"https:\/\/www.swissdock.ch\/\">https:\/\/www.swissdock.ch\/<\/a> (Online Tools)<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Chimera :   <a href=\"https:\/\/www.cgl.ucsf.edu\/chimera\/download.html\">https:\/\/www.cgl.ucsf.edu\/chimera\/download.html<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">I-TASSER : <a href=\"https:\/\/zhanggroup.org\/I-TASSER\/\">https:\/\/zhanggroup.org\/I-TASSER\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">DockThor:   <a href=\"https:\/\/dockthor.lncc.br\/v2\/\">https:\/\/dockthor.lncc.br\/v2\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">CASTpFold :  <a href=\"https:\/\/cfold.bme.uic.edu\/castpfold\/\">https:\/\/cfold.bme.uic.edu\/castpfold\/<\/a>  Active Site Prediction in Protein Before Docking<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Virtual Screening<\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">SwissADME:  <a href=\"http:\/\/www.swissadme.ch\/\">http:\/\/www.swissadme.ch\/<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Phylogenetics<\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">MEGA (Molecular Evolutionary Genetics Analysis):  <a href=\"https:\/\/www.megasoftware.net\/\">https:\/\/www.megasoftware.net\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">IQ-TREE:   <a href=\"http:\/\/www.iqtree.org\/\">http:\/\/www.iqtree.org\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">iTOL:      <a href=\"https:\/\/itol.embl.de\/itol.cgi\">https:\/\/itol.embl.de\/itol.cgi<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Primer Design<\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">PrimerBLAST:  <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/tools\/primer-blast\/\">https:\/\/www.ncbi.nlm.nih.gov\/tools\/primer-blast\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Primer3Web:  <a href=\"https:\/\/primer3.ut.ee\/\">https:\/\/primer3.ut.ee\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">OligoAnalyzer: <a href=\"https:\/\/sg.idtdna.com\/calc\/analyzer\">https:\/\/sg.idtdna.com\/calc\/analyzer<\/a> (Create Account at First)<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Drug Discovery<\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">Therapeutic Target Database:  <a href=\"https:\/\/ttd.idrblab.cn\/\">https:\/\/ttd.idrblab.cn\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">OrthoVenn2 :  <a href=\"https:\/\/orthovenn2.bioinfotoolkits.net\/\">https:\/\/orthovenn2.bioinfotoolkits.net\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Database of Essential Genes (DEG) : <a href=\"http:\/\/origin.tubic.org\/deg\/public\/index.php\">http:\/\/origin.tubic.org\/deg\/public\/index.php<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Gene Prediction Tools<\/h2>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Online Tools<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">GENSCAN:     <a href=\"http:\/\/hollywood.mit.edu\/GENSCAN.html\">http:\/\/hollywood.mit.edu\/GENSCAN.html<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Augustus:    <a href=\"https:\/\/bioinf.uni-greifswald.de\/augustus\/submission.php\">https:\/\/bioinf.uni-greifswald.de\/augustus\/submission.php<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">GeneMark:   <a href=\" https:\/\/exon.gatech.edu\/\"> https:\/\/exon.gatech.edu\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Offline Tools<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">GENSCAN:   <a href=\"http:\/\/hollywood.mit.edu\/gendist.html\">http:\/\/hollywood.mit.edu\/gendist.html<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Augustus:   <a href=\"https:\/\/bioinf.uni-greifswald.de\/augustus\/downloads\/\">https:\/\/bioinf.uni-greifswald.de\/augustus\/downloads\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">EuGene:     <a href=\"http:\/\/eugene.toulouse.inra.fr\/\">http:\/\/eugene.toulouse.inra.fr\/<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">MARKER:     <a href=\"https:\/\/www.yandell-lab.org\/software\/maker.html\">https:\/\/www.yandell-lab.org\/software\/maker.html<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Sequence Analysis Tools Pairwise Sequence Alignment Tools Basic Local Alignment Search Tool (BLAST) : https:\/\/blast.ncbi.nlm.nih.gov\/Blast.cgi (Alignment and Similarity Searching) Multiple [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_uag_custom_page_level_css":"","site-sidebar-layout":"default","site-content-layout":null,"ast-site-content-layout":"default","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":null,"ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":null,"ast-featured-img":"","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"","adv-header-id-meta":null,"stick-header-meta":null,"header-above-stick-meta":null,"header-main-stick-meta":null,"header-below-stick-meta":null,"astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"footnotes":""},"categories":[8,6],"tags":[],"class_list":["post-1059","post","type-post","status-publish","format-standard","hentry","category-bioinformatics","category-general-bioinformatics"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.7 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Bioinformatics Tools - Bioinformatics Notes<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Bioinformatics Tools - Bioinformatics Notes\" \/>\n<meta property=\"og:description\" content=\"Sequence Analysis Tools Pairwise Sequence Alignment Tools Basic Local Alignment Search Tool (BLAST) : https:\/\/blast.ncbi.nlm.nih.gov\/Blast.cgi (Alignment and Similarity Searching) Multiple [&hellip;]\" \/>\n<meta property=\"og:url\" content=\"https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/\" \/>\n<meta property=\"og:site_name\" content=\"Bioinformatics Notes\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/bioinformaticsnotes\/\" \/>\n<meta property=\"article:author\" content=\"https:\/\/www.facebook.com\/pokharelsugam.com.np\/\" \/>\n<meta property=\"article:published_time\" content=\"2025-02-23T12:43:14+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2025-11-25T16:52:37+00:00\" \/>\n<meta name=\"author\" content=\"Sugam\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@pokharel_sugam\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"Sugam\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"Article\",\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/bioinformatics-tools\\\/#article\",\"isPartOf\":{\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/bioinformatics-tools\\\/\"},\"author\":{\"name\":\"Sugam\",\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/#\\\/schema\\\/person\\\/35f4d57cc2e78f6c92a357133a5e4747\"},\"headline\":\"Bioinformatics Tools\",\"datePublished\":\"2025-02-23T12:43:14+00:00\",\"dateModified\":\"2025-11-25T16:52:37+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/bioinformatics-tools\\\/\"},\"wordCount\":448,\"commentCount\":0,\"publisher\":{\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/#organization\"},\"articleSection\":[\"Bioinformatics\",\"General Bioinformatics\"],\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"CommentAction\",\"name\":\"Comment\",\"target\":[\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/bioinformatics-tools\\\/#respond\"]}]},{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/bioinformatics-tools\\\/\",\"url\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/bioinformatics-tools\\\/\",\"name\":\"Bioinformatics Tools - Bioinformatics Notes\",\"isPartOf\":{\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/#website\"},\"datePublished\":\"2025-02-23T12:43:14+00:00\",\"dateModified\":\"2025-11-25T16:52:37+00:00\",\"breadcrumb\":{\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/bioinformatics-tools\\\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/bioinformatics-tools\\\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/bioinformatics-tools\\\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Bioinformatics Tools\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/#website\",\"url\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/\",\"name\":\"Bioinformatics Notes\",\"description\":\"\",\"publisher\":{\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/#organization\"},\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"en-US\"},{\"@type\":\"Organization\",\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/#organization\",\"name\":\"Bioinformatics Notes\",\"url\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/\",\"logo\":{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/#\\\/schema\\\/logo\\\/image\\\/\",\"url\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/wp-content\\\/uploads\\\/sites\\\/6\\\/2025\\\/01\\\/cropped-cropped-Bioinformatics_Notes_Logo.png\",\"contentUrl\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/wp-content\\\/uploads\\\/sites\\\/6\\\/2025\\\/01\\\/cropped-cropped-Bioinformatics_Notes_Logo.png\",\"width\":461,\"height\":293,\"caption\":\"Bioinformatics Notes\"},\"image\":{\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/#\\\/schema\\\/logo\\\/image\\\/\"},\"sameAs\":[\"https:\\\/\\\/www.facebook.com\\\/bioinformaticsnotes\\\/\",\"https:\\\/\\\/github.com\\\/pokharelsugam\"]},{\"@type\":\"Person\",\"@id\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/#\\\/schema\\\/person\\\/35f4d57cc2e78f6c92a357133a5e4747\",\"name\":\"Sugam\",\"image\":{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\\\/\\\/secure.gravatar.com\\\/avatar\\\/775860ea034c0c86990dad8f198568e219e4d183f79d82f52b1ac35c9bca5c10?s=96&d=mm&r=g\",\"url\":\"https:\\\/\\\/secure.gravatar.com\\\/avatar\\\/775860ea034c0c86990dad8f198568e219e4d183f79d82f52b1ac35c9bca5c10?s=96&d=mm&r=g\",\"contentUrl\":\"https:\\\/\\\/secure.gravatar.com\\\/avatar\\\/775860ea034c0c86990dad8f198568e219e4d183f79d82f52b1ac35c9bca5c10?s=96&d=mm&r=g\",\"caption\":\"Sugam\"},\"description\":\"M.Sc. Bioinformatics (Pokhara University) -Running B.Sc. Microbiology (Tribhuvan University)\",\"sameAs\":[\"https:\\\/\\\/pokharelsugam.com.np\",\"https:\\\/\\\/www.facebook.com\\\/pokharelsugam.com.np\\\/\",\"https:\\\/\\\/www.instagram.com\\\/pokharelsugam.com.np\\\/\",\"https:\\\/\\\/www.linkedin.com\\\/in\\\/sugam-pokharel-40077913b\\\/\",\"https:\\\/\\\/www.pinterest.com\\\/pokharel_sugam\\\/\",\"https:\\\/\\\/x.com\\\/pokharel_sugam\",\"https:\\\/\\\/www.youtube.com\\\/@pokharel_sugam\",\"https:\\\/\\\/www.tumblr.com\\\/pokharelsugam\"],\"url\":\"https:\\\/\\\/pokharelsugam.com.np\\\/bioinformatics\\\/author\\\/pokharelsugam\\\/\"}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Bioinformatics Tools - Bioinformatics Notes","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/","og_locale":"en_US","og_type":"article","og_title":"Bioinformatics Tools - Bioinformatics Notes","og_description":"Sequence Analysis Tools Pairwise Sequence Alignment Tools Basic Local Alignment Search Tool (BLAST) : https:\/\/blast.ncbi.nlm.nih.gov\/Blast.cgi (Alignment and Similarity Searching) Multiple [&hellip;]","og_url":"https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/","og_site_name":"Bioinformatics Notes","article_publisher":"https:\/\/www.facebook.com\/bioinformaticsnotes\/","article_author":"https:\/\/www.facebook.com\/pokharelsugam.com.np\/","article_published_time":"2025-02-23T12:43:14+00:00","article_modified_time":"2025-11-25T16:52:37+00:00","author":"Sugam","twitter_card":"summary_large_image","twitter_creator":"@pokharel_sugam","twitter_misc":{"Written by":"Sugam","Est. reading time":"1 minute"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"Article","@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/#article","isPartOf":{"@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/"},"author":{"name":"Sugam","@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/#\/schema\/person\/35f4d57cc2e78f6c92a357133a5e4747"},"headline":"Bioinformatics Tools","datePublished":"2025-02-23T12:43:14+00:00","dateModified":"2025-11-25T16:52:37+00:00","mainEntityOfPage":{"@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/"},"wordCount":448,"commentCount":0,"publisher":{"@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/#organization"},"articleSection":["Bioinformatics","General Bioinformatics"],"inLanguage":"en-US","potentialAction":[{"@type":"CommentAction","name":"Comment","target":["https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/#respond"]}]},{"@type":"WebPage","@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/","url":"https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/","name":"Bioinformatics Tools - Bioinformatics Notes","isPartOf":{"@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/#website"},"datePublished":"2025-02-23T12:43:14+00:00","dateModified":"2025-11-25T16:52:37+00:00","breadcrumb":{"@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/#breadcrumb"},"inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/"]}]},{"@type":"BreadcrumbList","@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/bioinformatics-tools\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Home","item":"https:\/\/pokharelsugam.com.np\/bioinformatics\/"},{"@type":"ListItem","position":2,"name":"Bioinformatics Tools"}]},{"@type":"WebSite","@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/#website","url":"https:\/\/pokharelsugam.com.np\/bioinformatics\/","name":"Bioinformatics Notes","description":"","publisher":{"@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/#organization"},"potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/pokharelsugam.com.np\/bioinformatics\/?s={search_term_string}"},"query-input":{"@type":"PropertyValueSpecification","valueRequired":true,"valueName":"search_term_string"}}],"inLanguage":"en-US"},{"@type":"Organization","@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/#organization","name":"Bioinformatics Notes","url":"https:\/\/pokharelsugam.com.np\/bioinformatics\/","logo":{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/#\/schema\/logo\/image\/","url":"https:\/\/pokharelsugam.com.np\/bioinformatics\/wp-content\/uploads\/sites\/6\/2025\/01\/cropped-cropped-Bioinformatics_Notes_Logo.png","contentUrl":"https:\/\/pokharelsugam.com.np\/bioinformatics\/wp-content\/uploads\/sites\/6\/2025\/01\/cropped-cropped-Bioinformatics_Notes_Logo.png","width":461,"height":293,"caption":"Bioinformatics Notes"},"image":{"@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/#\/schema\/logo\/image\/"},"sameAs":["https:\/\/www.facebook.com\/bioinformaticsnotes\/","https:\/\/github.com\/pokharelsugam"]},{"@type":"Person","@id":"https:\/\/pokharelsugam.com.np\/bioinformatics\/#\/schema\/person\/35f4d57cc2e78f6c92a357133a5e4747","name":"Sugam","image":{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/secure.gravatar.com\/avatar\/775860ea034c0c86990dad8f198568e219e4d183f79d82f52b1ac35c9bca5c10?s=96&d=mm&r=g","url":"https:\/\/secure.gravatar.com\/avatar\/775860ea034c0c86990dad8f198568e219e4d183f79d82f52b1ac35c9bca5c10?s=96&d=mm&r=g","contentUrl":"https:\/\/secure.gravatar.com\/avatar\/775860ea034c0c86990dad8f198568e219e4d183f79d82f52b1ac35c9bca5c10?s=96&d=mm&r=g","caption":"Sugam"},"description":"M.Sc. Bioinformatics (Pokhara University) -Running B.Sc. Microbiology (Tribhuvan University)","sameAs":["https:\/\/pokharelsugam.com.np","https:\/\/www.facebook.com\/pokharelsugam.com.np\/","https:\/\/www.instagram.com\/pokharelsugam.com.np\/","https:\/\/www.linkedin.com\/in\/sugam-pokharel-40077913b\/","https:\/\/www.pinterest.com\/pokharel_sugam\/","https:\/\/x.com\/pokharel_sugam","https:\/\/www.youtube.com\/@pokharel_sugam","https:\/\/www.tumblr.com\/pokharelsugam"],"url":"https:\/\/pokharelsugam.com.np\/bioinformatics\/author\/pokharelsugam\/"}]}},"uagb_featured_image_src":{"full":false,"thumbnail":false,"medium":false,"medium_large":false,"large":false,"1536x1536":false,"2048x2048":false},"uagb_author_info":{"display_name":"Sugam","author_link":"https:\/\/pokharelsugam.com.np\/bioinformatics\/author\/pokharelsugam\/"},"uagb_comment_info":0,"uagb_excerpt":"Sequence Analysis Tools Pairwise Sequence Alignment Tools Basic Local Alignment Search Tool (BLAST) : https:\/\/blast.ncbi.nlm.nih.gov\/Blast.cgi (Alignment and Similarity Searching) Multiple [&hellip;]","_links":{"self":[{"href":"https:\/\/pokharelsugam.com.np\/bioinformatics\/wp-json\/wp\/v2\/posts\/1059","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/pokharelsugam.com.np\/bioinformatics\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/pokharelsugam.com.np\/bioinformatics\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/pokharelsugam.com.np\/bioinformatics\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/pokharelsugam.com.np\/bioinformatics\/wp-json\/wp\/v2\/comments?post=1059"}],"version-history":[{"count":18,"href":"https:\/\/pokharelsugam.com.np\/bioinformatics\/wp-json\/wp\/v2\/posts\/1059\/revisions"}],"predecessor-version":[{"id":1102,"href":"https:\/\/pokharelsugam.com.np\/bioinformatics\/wp-json\/wp\/v2\/posts\/1059\/revisions\/1102"}],"wp:attachment":[{"href":"https:\/\/pokharelsugam.com.np\/bioinformatics\/wp-json\/wp\/v2\/media?parent=1059"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/pokharelsugam.com.np\/bioinformatics\/wp-json\/wp\/v2\/categories?post=1059"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/pokharelsugam.com.np\/bioinformatics\/wp-json\/wp\/v2\/tags?post=1059"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}